For each miRNA, we provide all predicted targets as tab-separated files for download. The files contain one line per gene with the following columns: CG-ID, gene name, Flybase-ID, GO-terms, validated (Real) or predicted (PRED) UTR, score of best site, total score of all sites, number of sites.

You can also download all predictions in one large file here. The file contains one line per predicted miRNA/gene pair with the following columns: miRNA, CG-ID, gene name, Flybase-ID, validated (Real) or predicted (PRED) UTR, score of best site, total score of all sites, number of sites.

Download the individual target sites here.

Please see the following papers for details and please cite them in your work:

• Brennecke J, Stark A, Russell RB, Cohen SM (2005) Principles of MicroRNA-Target Recognition. PLoS Biol 3(3): e85 (Free Full Text)
• Stark A, Brennecke J, Bushati N, Russell RB, Cohen SM (2003) Animal microRNAs Confer Robustness to Gene Expression and Have a Significant Impact on 3'UTR Evolution. Cell, In Press 2005. (Full Text PDF)

For questions regarding the availability of predictions or the method itself please contact Stephen M. Cohen.

Please contact me with suggestions or problems concerning this website (Alexander Stark).

© Alexander Stark, Julius Brennecke, Robert B. Russell and Stephen M. Cohen, 2003/5
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